At a wild guess, I'd say that the disks got powered down but the OS/computer never properly did.

Do you use AppleTalk? If not, and it's on, try turning it off. (I haven't used AppleTalk since well before OSX, so I'm not really sure that even makes sense, but try it anyway.)

Note that I'm talking wild guesses. I could be completely off base.
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Bitt Faulk